1. Anatomical Automatic Labeling Manual Transmission Kit

An indefinite guide to the foxbody Mustang manual transmission. To most of us a foxbody without a clutch pedal just isn’t “right” but a lot of us don’t know the history behind the different transmissions offered over the foxbody lifespan. You most likely have a T5 in your fox but did you know not all.

Individual Stages Volumetric Processing Stages (subjid/mri): 1. Motion Cor, Avg, Conform (orig. Talairach transform computation 3. Non-uniform inorm (nu. Intensity Normalization 1 (T 1.

Anatomical Automatic Labeling Manual Transmission Kit

Skull Strip (brain. Surface Processing Stages (subjid/surf): 14. Tessellate (? Smoothwm) 16. Inflated) 17. Automatic Topology Fixer (? Euler Number EM Register (linear volumetric registration) 20.

Smooth 2 CA Intensity Normalization 21. Inflate 2 CA Non-linear Volumetric Registration 22. Final Surfs (? Pial) CA Label (Volumetric Labeling) (aseg. Cortical Ribbon Mask 10. Intensity Normalization 2 (T 1. White matter segmentation (wm.

Edit WM With ASeg 13. Fill and cut (filled. Mgz) Green = Manual Intervention? Recon-all -help 24. Spherical Morph 25.

Spherical Registration 26. Spherical Registration 27.

Map average curvature to subject 28. Cortical Parcellation (Labeling) 29. Cortical Parcellation Statistics 30.

Cortical Parcellation mapped to ASeg Note:? Orig means lh. Mgz MC NU Conform autorecon 1 begins 003. Mgz talairach.

Mgz Talairach talairach. Xfm tkregister 2 nu. Mgz INorm 1 CP CANorm brainmask. Strip brainmask. Mgz nunoneck.

Mgz EMReg BM-tkmedit autorecon 1 ends Rm. Skull talairach. Lta autorecon 2 begins talairach. Mgz CAReg brainmask.

Mgz talairach. Mgz CALabel ASeg-tkmedit ASeg Stats aseg. Stats talairach. Lta INorm 2 brain. Mgz WMSeg WM-tkmedit autorecon 2 -cp begins wm. Mgz Fill. autorecon 2 -wm begins Seed Points WMSeg includes mrisegment, editwmwithaseg, and mripretess CP = Control Points Fill can have (aseg.

Lta) or (tal. Xfm, cutting planes) as input, but not both filled.

Nofix Tess 1? Nofix Smooth 1? Nofix Inflate 1 autorecon 2 -pial begins brainmask. Mgz BFSMask Smooth 2 brain. Nofix qsphere 1? Sulc Inflate 2 brain.

White filled. Thickness Final Surfs Ribbon? $GCSmgz AParc+ASeg autorecon 2 ends? Inflated Sphere? Smoothwm autorecon 3 begins $GCS?

Reg Parcellate? Troubleshooting – Common Cases (. Individual Stages Volumetric Processing Stages (subjid/mri): 1.

Motion Cor, Avg, Conform (orig. Talairach transform computation 3. Non-uniform inorm (nu. Intensity Normalization 1 (T 1. Skull Strip (brain. Surface Processing Stages (subjid/surf): 14.

Tessellate (? Smoothwm) 16. Inflated) 17. Automatic Topology Fixer (? Euler Number EM Register (linear volumetric registration) 20. Smooth 2 CA Intensity Normalization 21. Inflate 2 CA Non-linear Volumetric Registration 22.

Final Surfs (? Pial) CA Label (Volumetric Labeling) (aseg. Cortical Ribbon Mask 10. Intensity Normalization 2 (T 1. White matter segmentation (wm.

Edit WM With ASeg 13. Fill and cut (filled. Mgz) Green = Manual Intervention? Recon-all -help 24. Spherical Morph 25. Spherical Registration 26. Spherical Registration 27.

Map average curvature to subject 28. Cortical Parcellation (Labeling) 29. Cortical Parcellation Statistics 30. Cortical Parcellation mapped to ASeg Note:? Orig means lh.

ROI Summaries: $SUBJECTSDIR/bert/stats aseg. Stats – volume summaries? Stats – desikan/killiany parcellation summaries? Stats – destrieux parcellation summaries wmparc. Stats – white matter parcellation Index Seg. Id NVoxels Volumemm 3 Struct. Range 1 1 0 0.

0 Left-Cerebral-Exterior 0. 0000 2 2 265295. 0 Left-Cerebral-White-Matter 106. 0000 3 3 251540. 0 Left-Cerebral-Cortex 81. 0000 4 4 7347. 0 Left-Lateral-Ventricle 42.

0000 5 5 431. 0 Left-Inf-Lat-Vent 66.

0000 6 6 0 0. 0 Left-Cerebellum-Exterior 0. Routines to generate spread sheets of group data. asegstats 2 table -help. aparcstats 2 table -help.